University of Connecticut University of UC Title Fallback Connecticut

Student presentations 1-7

MCB5472_class_04_28_2014.pptx

Lecture for 4/21/2014

Topics:
LRT, supertrees vs supermatrix, gene families, and sign-up sheet for student presentations.

powerpoint slides are at MCB5472_lecture_04_21_2014.pptx
pdf summary at MCB5472_lecture_04_21_2014.pdf

 

Computerlab Exercise #11

MCB5472 Comp Lab 11

Lecture #10 from 4/14/2014 on types of selection

Powerpoint slides are at MCB5472_lecture_04_14_2014.pptx

PDF of overview slides are at MCB5472_lecture_04_14_2014.pdf

Computer lab exercise #10

Instructions for today’s lab are at MCB5472_computer_lab_10.

 

Lecture #9 04/07/2014 and homework assignment for 4/14

Topic: extracting phylogenetic information, mechanisms of evolution, and types of selection

pptx slides for lecture #9 are at MCB5472_lecture_04_7_2014.

pdf summary slides are at MCB5472_lecture_04_7_2014

Computerlab exercises #9

Computer Lab Exercises #9

For slides with background information see MCB5472_lab_04_02_2014

 

Lecture #8 03/31/2014 and homework assignment for 4/7

pptx slides for lecture are at MCB5472_lecture_03_31_2014 (links only work, if you are in presentation mode)

Slides of what we actually covered are at MCB5472_lecture_03_31_2014 short

pdf summary is at MCB5472_lecture_03_31_2014.pptx

Homework for next week is on slide 73 or at Homework for 4_6

Sample scripts for oligos scanning are at Homework_for_3_31  :
tetra.pl: scans genome and lists tetramers (both to table and screen)
nmerfreq.pl: scans genome and lists n-mers (n-mer size specified in script)
nmerfreqMod.pl: scans genome and lists n-mers and calls an R-script that produces a histogram
histogramScript_pdf.R: R script that produces histogram from a list of numbers and also compares the observed frequency to the frequency expected under a normal distribution. Documentation in histogramScript.R.read_me.doc

 

 

Computer Lab #8

Slides with comments and instructions in powerpoint format are at MCB5472_lecture_3_26 and in pdf format (some link will not work) are at MCB5472_lecture_3_26.

Please send scripts and figures for the in class assignment (ZIP archive of script and figures as jpg, png or excel file) to jpgogarten@gmail.com.  Please indicate the genome you used to create the figures.

 

Assignment #9 (homework)

Assignment9 (pptx slides).

Please email answers to gogarten@uconn.edu before class on Monday.