Instructions for today’s lab are at MCB5472_computer_lab_10.
pptx slides for lecture are at MCB5472_lecture_03_31_2014 (links only work, if you are in presentation mode)
Slides of what we actually covered are at MCB5472_lecture_03_31_2014 short
pdf summary is at MCB5472_lecture_03_31_2014.pptx
Homework for next week is on slide 73 or at Homework for 4_6
Sample scripts for oligos scanning are at Homework_for_3_31 :
tetra.pl: scans genome and lists tetramers (both to table and screen)
nmerfreq.pl: scans genome and lists n-mers (n-mer size specified in script)
nmerfreqMod.pl: scans genome and lists n-mers and calls an R-script that produces a histogram
histogramScript_pdf.R: R script that produces histogram from a list of numbers and also compares the observed frequency to the frequency expected under a normal distribution. Documentation in histogramScript.R.read_me.doc
Please send scripts and figures for the in class assignment (ZIP archive of script and figures as jpg, png or excel file) to firstname.lastname@example.org. Please indicate the genome you used to create the figures.
Assignment9 (pptx slides).
Please email answers to email@example.com before class on Monday.