Author: Gogarten, J. Peter

Sample scripts for oligos scanning are at Homework_for_3_31 :
tetra.pl: scans genome and lists tetramers (both to table and screen)
nmerfreq.pl: scans genome and lists n-mers (n-mer size specified in script)
nmerfreqMod.pl: scans genome and lists n-mers and calls an R-script that produces a histogram
histogramScript_pdf.R: R script that produces histogram from a list of numbers and also compares the observed frequency to the frequency expected under a normal distribution. Documentation in histogramScript.R.read_me.doc

Computer Lab #8

Posted on March 26, 2014March 26, 2014 by Gogarten, J. Peter

Slides with comments and instructions in powerpoint format are at MCB5472_lecture_3_26 and in pdf format (some link will not work) are at MCB5472_lecture_3_26.

Please send scripts and figures for the in class assignment (ZIP archive of script and figures as jpg, png or excel file) to jpgogarten@gmail.com. Please indicate the genome you used to create the figures.

Assignment #9 (homework)

Posted on March 25, 2014March 25, 2014 by Gogarten, J. Peter

Assignment9 (pptx slides).

Please email answers to gogarten@uconn.edu before class on Monday.

mcb5472

Author: Gogarten, J. Peter

Student presentations 1-7

Lecture for 4/21/2014

Computerlab Exercise #11

Lecture #10 from 4/14/2014 on types of selection

Computer lab exercise #10

Lecture #9 04/07/2014 and homework assignment for 4/14

Computerlab exercises #9

Lecture #8 03/31/2014 and homework assignment for 4/7

Computer Lab #8

Assignment #9 (homework)